Robert Jorissen's archival material - PhD thesis



Chapter 5

Generation of additional restraints for MODELLER (see Appendix A):

Example alignment
Example MODELLER script



Chapter 6

C programs:

interface.c
q_eval.c
COMpare.c
seq_struct.c (used to evaluate conservation of conserved hydrophobic residues)
BOXfilter.c (used in first filter of docking EGF)
COM.c (used in first filter of docking EGF)
dist_filter.c (used in second filter of docking EGF)

XPLOR script to perform superimposition and auxilliary AWK scripts

superimpose.inp
bscript1.awk (First AWK script called by the XPLOR script)
ascript1.awk (Second AWK script called by the XPLOR script)