Multiple sequence alignment and phylogenetic trees

11/10/2002

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Table of Contents

Multiple sequence alignment and phylogenetic trees

Tree topologies

All trees : 3 taxa

All trees : 4 taxa

All trees : ɰ taxa

Tree reconstruction: some methods

Protein evolution: useful distinction

Species and gene trees(after M. Nei 1987, Molecular Evolutionary Genetics.)

Beta-globins (orthologues)

Human globins (paralogues)

Markov chain Monte Carlo alignment

Web-based multiple sequence alignment

Comparing multiple sequence alignment programs

Multiple sequence alignment editors

Author: George Rudy